Package fr.ifremer.isisfish.entities

Class PopulationImpl

java.lang.Object

org.nuiton.topia.persistence.TopiaEntityAbstract

fr.ifremer.isisfish.entities.PopulationAbstract

fr.ifremer.isisfish.entities.PopulationImpl

All Implemented Interfaces:

Population, Serializable, org.nuiton.topia.persistence.TopiaEntity, org.nuiton.topia.persistence.TopiaEntityContextable

public class PopulationImpl
extends PopulationAbstract

PopulationImpl. Created: 11 janv. 2006 20:16:27

Version:

$Revision$ Last update: $Date$ by : $Author$

Author:

poussin

See Also:

• Serialized Form

Field Summary

Fields inherited from class fr.ifremer.isisfish.entities.PopulationAbstract

abundanceReferenceMonth, capturability, capturabilityComment, capturabilityEquation, capturabilityEquationUsed, caractBioComment, comment, computeFOnLandings, fbarGroupMax, fbarGroupMin, fishingMortalityOtherFleets, gearSelectivity, geographicId, growth, growthReverse, mappingZoneReproZoneRecru, maturityOgiveEquation, meanWeight, migrationComment, monthGapBetweenReproRecrutement, name, naturalDeathRate, plusGroup, populationGroup, populationSeasonInfo, populationZone, price, recruitmentComment, recruitmentDistribution, recruitmentEquation, recruitmentZone, reproductionEquation, reproductionRateEquation, reproductionZone, seasonsComment, species, zonesComment

Fields inherited from class org.nuiton.topia.persistence.TopiaEntityAbstract

readListeners, readVetoables, topiaContext, topiaCreateDate, topiaId, topiaVersion, writeListeners, writeVetoables

Fields inherited from interface fr.ifremer.isisfish.entities.Population

PROPERTY_ABUNDANCE_REFERENCE_MONTH, PROPERTY_CAPTURABILITY, PROPERTY_CAPTURABILITY_COMMENT, PROPERTY_CAPTURABILITY_EQUATION, PROPERTY_CAPTURABILITY_EQUATION_USED, PROPERTY_CARACT_BIO_COMMENT, PROPERTY_COMMENT, PROPERTY_COMPUTE_FON_LANDINGS, PROPERTY_FBAR_GROUP_MAX, PROPERTY_FBAR_GROUP_MIN, PROPERTY_FISHING_MORTALITY_OTHER_FLEETS, PROPERTY_GEAR_SELECTIVITY, PROPERTY_GEOGRAPHIC_ID, PROPERTY_GROWTH, PROPERTY_GROWTH_REVERSE, PROPERTY_MAPPING_ZONE_REPRO_ZONE_RECRU, PROPERTY_MATURITY_OGIVE_EQUATION, PROPERTY_MEAN_WEIGHT, PROPERTY_MIGRATION_COMMENT, PROPERTY_MONTH_GAP_BETWEEN_REPRO_RECRUTEMENT, PROPERTY_NAME, PROPERTY_NATURAL_DEATH_RATE, PROPERTY_PLUS_GROUP, PROPERTY_POPULATION_GROUP, PROPERTY_POPULATION_SEASON_INFO, PROPERTY_POPULATION_ZONE, PROPERTY_PRICE, PROPERTY_RECRUITMENT_COMMENT, PROPERTY_RECRUITMENT_DISTRIBUTION, PROPERTY_RECRUITMENT_EQUATION, PROPERTY_RECRUITMENT_ZONE, PROPERTY_REPRODUCTION_EQUATION, PROPERTY_REPRODUCTION_RATE_EQUATION, PROPERTY_REPRODUCTION_ZONE, PROPERTY_SEASONS_COMMENT, PROPERTY_SPECIES, PROPERTY_ZONES_COMMENT

Fields inherited from interface org.nuiton.topia.persistence.TopiaEntity

AGGREGATE, COMPOSITE, TOPIA_CREATE_DATE, TOPIA_ID, TOPIA_VERSION

Fields inherited from interface org.nuiton.topia.persistence.TopiaEntityContextable

TOPIA_CONTEXT

Constructor Summary

Constructors

Constructor	Description
PopulationImpl()

Method Summary

Modifier and Type	Method	Description
void	delete()	Overwrite delete.
double	getAge(double length, PopulationGroup group)	Compute age of group with length
org.nuiton.math.matrix.MatrixND	getCapturability()
org.nuiton.math.matrix.MatrixND	getFishingMortalityOtherFleetsMatrix()	Return Matrix [groups x zones] of Fishing mortality other fleets.
double	getLength(double age, PopulationGroup group)	Compute length of group with age.
org.nuiton.math.matrix.MatrixND	getMappingZoneReproZoneRecru()
double	getNaturalDeathBirth(Zone zone)
org.nuiton.math.matrix.MatrixND	getNaturalDeathRateMatrix()	Return Matrix [groups x zones] of Natural death rate.
PopulationSeasonInfo	getPopulationSeasonInfo(Month month)
org.nuiton.math.matrix.MatrixND	getRecruitmentMatrix(TimeStep step, Population pop, RecruitmentInputMap recruitmentInputs, org.nuiton.math.matrix.MatrixND result)
org.nuiton.math.matrix.MatrixND	N2DToN1D(org.nuiton.math.matrix.MatrixND N)	Convertie une matrice N 2D en une matrice N 1D strucutre pour les calculer.
void	setCapturability(org.nuiton.math.matrix.MatrixND value)
void	setCapturabilityEquationContent(String content)
void	setFishingMortalityOtherFleetsContent(String content)
void	setGrowthContent(String content)
void	setGrowthReverseContent(String content)
void	setMaturityOgiveEquationContent(String content)
void	setMeanWeightContent(String content)
void	setName(String value)	Override to change name of equation.
void	setNaturalDeathRateContent(String content)
void	setPopulationGroup(List<PopulationGroup> populationGroup)	Surcharge car avec une aggregation (lien fort) il ne faut pas remplacer la collection, mais vider celle qui existe et y mettre les nouveaux elements sinon hibernate perd la tete et leve des exceptions (detecter lors de l'implantation de l'import json)
void	setPopulationSeasonInfo(List<PopulationSeasonInfo> populationSeasonInfo)	Surcharge car avec une aggregation (lien fort) il ne faut pas remplacer la collection, mais vider celle qui existe et y mettre les nouveaux elements sinon hibernate perd la tete et leve des exceptions (detecter lors de l'implantation de l'import json)
void	setPopulationZone(List<Zone> populationZone)	Surcharge car avec une aggregation (lien fort) il ne faut pas remplacer la collection, mais vider celle qui existe et y mettre les nouveaux elements sinon hibernate perd la tete et leve des exceptions (detecter lors de l'implantation de l'import json)
void	setPriceContent(String content)
void	setRecruitmentEquationContent(String content)
void	setReproductionEquationContent(String content)
void	setReproductionRateEquationContent(String content)
org.nuiton.math.matrix.MatrixND	split2D(org.nuiton.math.matrix.MatrixND N)	A partir d'une matrice N structure selon l'ecriture matricielle en classe puis en zone, construit une matrice 2D en Classe(X) et en Zone(Y)
String	toString()

Methods inherited from class fr.ifremer.isisfish.entities.PopulationAbstract

accept, accept0, addAllPopulationGroup, addAllPopulationSeasonInfo, addAllPopulationZone, addAllRecruitmentZone, addAllReproductionZone, addPopulationGroup, addPopulationSeasonInfo, addPopulationZone, addRecruitmentZone, addReproductionZone, clearPopulationGroup, clearPopulationSeasonInfo, clearPopulationZone, clearRecruitmentZone, clearReproductionZone, getAbundanceReferenceMonth, getAggregate, getCapturabilityComment, getCapturabilityEquation, getCapturabilityEquationUsed, getCaractBioComment, getComment, getComposite, getComputeFOnLandings, getFbarGroupMax, getFbarGroupMin, getFishingMortalityOtherFleets, getGeographicId, getGrowth, getGrowthReverse, getMaturityOgiveEquation, getMeanWeight, getMigrationComment, getMonthGapBetweenReproRecrutement, getName, getNaturalDeathRate, getPlusGroup, getPopulationGroup, getPopulationGroupByTopiaId, getPopulationSeasonInfo, getPopulationSeasonInfoByTopiaId, getPopulationZone, getPopulationZoneByTopiaId, getPrice, getRecruitmentComment, getRecruitmentDistribution, getRecruitmentEquation, getRecruitmentZone, getRecruitmentZoneByTopiaId, getReproductionEquation, getReproductionRateEquation, getReproductionZone, getReproductionZoneByTopiaId, getSeasonsComment, getSpecies, getZonesComment, isCapturabilityEquationUsed, isComputeFOnLandings, isPlusGroup, isPopulationGroupEmpty, isPopulationSeasonInfoEmpty, isPopulationZoneEmpty, isRecruitmentZoneEmpty, isReproductionZoneEmpty, removePopulationGroup, removePopulationSeasonInfo, removePopulationZone, removeRecruitmentZone, removeReproductionZone, setAbundanceReferenceMonth, setCapturabilityComment, setCapturabilityEquation, setCapturabilityEquationUsed, setCaractBioComment, setComment, setComputeFOnLandings, setFbarGroupMax, setFbarGroupMin, setFishingMortalityOtherFleets, setGeographicId, setGrowth, setGrowthReverse, setMappingZoneReproZoneRecru, setMaturityOgiveEquation, setMeanWeight, setMigrationComment, setMonthGapBetweenReproRecrutement, setNaturalDeathRate, setPlusGroup, setPrice, setRecruitmentComment, setRecruitmentDistribution, setRecruitmentEquation, setRecruitmentZone, setReproductionEquation, setReproductionRateEquation, setReproductionZone, setSeasonsComment, setSpecies, setZonesComment, sizePopulationGroup, sizePopulationSeasonInfo, sizePopulationZone, sizeRecruitmentZone, sizeReproductionZone, update

Methods inherited from class org.nuiton.topia.persistence.TopiaEntityAbstract

addPropertyChangeListener, addPropertyChangeListener, addPropertyListener, addPropertyListener, addVetoableChangeListener, addVetoableChangeListener, addVetoableListener, addVetoableListener, equals, fireOnPostRead, fireOnPostRead, fireOnPostWrite, fireOnPostWrite, fireOnPreRead, fireOnPreWrite, getReadPropertyChangeSupport, getReadVetoableChangeSupport, getTopiaContext, getTopiaCreateDate, getTopiaId, getTopiaVersion, getWritePropertyChangeSupport, getWriteVetoableChangeSupport, hashCode, removePropertyChangeListener, removePropertyChangeListener, removePropertyListener, removePropertyListener, removeVetoableChangeListener, removeVetoableChangeListener, removeVetoableListener, removeVetoableListener, setTopiaContext, setTopiaCreateDate, setTopiaId, setTopiaVersion

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.nuiton.topia.persistence.TopiaEntity

addPropertyChangeListener, addPropertyChangeListener, addPropertyListener, addPropertyListener, addVetoableChangeListener, addVetoableChangeListener, addVetoableListener, addVetoableListener, getTopiaCreateDate, getTopiaId, getTopiaVersion, removePropertyChangeListener, removePropertyChangeListener, removePropertyListener, removePropertyListener, removeVetoableChangeListener, removeVetoableChangeListener, removeVetoableListener, removeVetoableListener, setTopiaCreateDate, setTopiaId, setTopiaVersion

Methods inherited from interface org.nuiton.topia.persistence.TopiaEntityContextable

getTopiaContext, setTopiaContext

Constructor Details

PopulationImpl

public PopulationImpl()

Method Details

setPopulationGroup

public void setPopulationGroup(List<PopulationGroup> populationGroup)

Surcharge car avec une aggregation (lien fort) il ne faut pas remplacer la collection, mais vider celle qui existe et y mettre les nouveaux elements sinon hibernate perd la tete et leve des exceptions (detecter lors de l'implantation de l'import json)

Specified by:

setPopulationGroup in interface Population

Overrides:

setPopulationGroup in class PopulationAbstract

setPopulationSeasonInfo

public void setPopulationSeasonInfo(List<PopulationSeasonInfo> populationSeasonInfo)

Surcharge car avec une aggregation (lien fort) il ne faut pas remplacer la collection, mais vider celle qui existe et y mettre les nouveaux elements sinon hibernate perd la tete et leve des exceptions (detecter lors de l'implantation de l'import json)

Specified by:

setPopulationSeasonInfo in interface Population

Overrides:

setPopulationSeasonInfo in class PopulationAbstract

setPopulationZone

public void setPopulationZone(List<Zone> populationZone)

Surcharge car avec une aggregation (lien fort) il ne faut pas remplacer la collection, mais vider celle qui existe et y mettre les nouveaux elements sinon hibernate perd la tete et leve des exceptions (detecter lors de l'implantation de l'import json)

Specified by:

setPopulationZone in interface Population

Overrides:

setPopulationZone in class PopulationAbstract

delete

public void delete()
            throws org.nuiton.topia.TopiaException

Overwrite delete.

Specified by:

delete in interface org.nuiton.topia.persistence.TopiaEntityContextable

Overrides:

delete in class PopulationAbstract

Throws:

org.nuiton.topia.TopiaException

toString

public String toString()

Overrides:

toString in class PopulationAbstract

setName

public void setName(String value)

Override to change name of equation.

Specified by:

setName in interface Population

Overrides:

setName in class PopulationAbstract

See Also:

• PopulationAbstract.setName(java.lang.String)

setReproductionEquationContent

public void setReproductionEquationContent(String content)

setRecruitmentEquationContent

public void setRecruitmentEquationContent(String content)

setGrowthContent

public void setGrowthContent(String content)

setGrowthReverseContent

public void setGrowthReverseContent(String content)

setNaturalDeathRateContent

public void setNaturalDeathRateContent(String content)

setFishingMortalityOtherFleetsContent

public void setFishingMortalityOtherFleetsContent(String content)

setMeanWeightContent

public void setMeanWeightContent(String content)

setMaturityOgiveEquationContent

public void setMaturityOgiveEquationContent(String content)

setReproductionRateEquationContent

public void setReproductionRateEquationContent(String content)

setPriceContent

public void setPriceContent(String content)

getNaturalDeathBirth

public double getNaturalDeathBirth(Zone zone)

getNaturalDeathRateMatrix

public org.nuiton.math.matrix.MatrixND getNaturalDeathRateMatrix()

Return Matrix [groups x zones] of Natural death rate.

Returns:

a matrix

getFishingMortalityOtherFleetsMatrix

public org.nuiton.math.matrix.MatrixND getFishingMortalityOtherFleetsMatrix()

Return Matrix [groups x zones] of Fishing mortality other fleets.

Returns:

a matrix

getPopulationSeasonInfo

public PopulationSeasonInfo getPopulationSeasonInfo(Month month)

getAge

public double getAge(double length,
 PopulationGroup group)

Compute age of group with length

Parameters:

length - length of group

group - group

Returns:

age in month

getLength

public double getLength(double age,
 PopulationGroup group)

Compute length of group with age.

Parameters:

age - age of group in month

group - group

Returns:

length of group

setCapturability

public void setCapturability(org.nuiton.math.matrix.MatrixND value)

Specified by:

setCapturability in interface Population

Overrides:

setCapturability in class PopulationAbstract

getCapturability

public org.nuiton.math.matrix.MatrixND getCapturability()

Specified by:

getCapturability in interface Population

Overrides:

getCapturability in class PopulationAbstract

setCapturabilityEquationContent

public void setCapturabilityEquationContent(String content)

getMappingZoneReproZoneRecru

public org.nuiton.math.matrix.MatrixND getMappingZoneReproZoneRecru()

Specified by:

getMappingZoneReproZoneRecru in interface Population

Overrides:

getMappingZoneReproZoneRecru in class PopulationAbstract

N2DToN1D

public org.nuiton.math.matrix.MatrixND N2DToN1D(org.nuiton.math.matrix.MatrixND N)

Convertie une matrice N 2D en une matrice N 1D strucutre pour les calculer. N2D[classes, zones] --> N1D[classe1(zone1, zone2, ...), classe2(zone1, zone2, ...)]

See Also:

• split2D(MatrixND)

split2D

public org.nuiton.math.matrix.MatrixND split2D(org.nuiton.math.matrix.MatrixND N)

A partir d'une matrice N structure selon l'ecriture matricielle en classe puis en zone, construit une matrice 2D en Classe(X) et en Zone(Y)

See Also:

• N2DToN1D(MatrixND)

getRecruitmentMatrix

public org.nuiton.math.matrix.MatrixND getRecruitmentMatrix(TimeStep step,
 Population pop,
 RecruitmentInputMap recruitmentInputs,
 org.nuiton.math.matrix.MatrixND result)