fr.ifremer.isisfish.simulator.sensitivity

Class AbstractSensitivityAnalysis

java.lang.Object

fr.ifremer.isisfish.simulator.sensitivity.AbstractSensitivityAnalysis

All Implemented Interfaces:

SensitivityAnalysis

public abstract class AbstractSensitivityAnalysis
extends Object
implements SensitivityAnalysis

Constructor Summary

Constructors

Constructor and Description
AbstractSensitivityAnalysis()

Method Summary

Modifier and Type	Method and Description
protected void	checkAllFactorContinuous(List<Factor> factors) Test que tous les facteurs sont continues.
protected void	checkAllUniformDistribution(List<Factor> factors) Test que tous les facteurs sont continues.
protected void	closeEngine(org.nuiton.j2r.REngine engine, File outputDirectory) Save RData file and close Rengine.
protected String	createImportInstruction(SensitivityExport export, List<SimulationStorage> simulationStorages) Cree l'instruction R qui permet de relire le contenu d'un fichier genere par un Export Isis.
protected String	editRInstruction(String rCall) Affiche une boite de dialogue modale permettant de modifier l'expression R.
protected double	getBound(Factor factor, boolean min) Get factor domain bound depending on distribution.
protected String	getIsisFactorDistribution(List<Factor> factors)
protected double	getMaxBound(Factor factor) Get factor domain max bound depending on distribution.
protected double	getMinBound(Factor factor) Get factor domain min bound depending on distribution.
protected org.nuiton.j2r.REngine	openEngine(File outputDirectory) Open R engine and load RData file.
void	setIsisFactorsR(DesignPlan plan, File outputdirectory) Method to create the isis.factors dataframe in R.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fr.ifremer.isisfish.simulator.sensitivity.SensitivityAnalysis

analyzeResult, canManageCardinality, compute, getDescription

Constructor Detail

AbstractSensitivityAnalysis

public AbstractSensitivityAnalysis()

Method Detail

setIsisFactorsR

public void setIsisFactorsR(DesignPlan plan,
                            File outputdirectory)
                     throws SensitivityException

Method to create the isis.factors dataframe in R.

Parameters:

plan - Design plan of the sensitivity analysis

outputdirectory - the directory on which we will calculate the destination RData file. The RData file will be named directory.RData and saved in the directory parent.

Throws:

SensitivityException - if an error occur while talking to R

openEngine

protected org.nuiton.j2r.REngine openEngine(File outputDirectory)
                                     throws org.nuiton.j2r.RException

Open R engine and load RData file.

Parameters:

outputDirectory - save directory

Returns:

rengine

Throws:

org.nuiton.j2r.RException

closeEngine

protected void closeEngine(org.nuiton.j2r.REngine engine,
                           File outputDirectory)
                    throws org.nuiton.j2r.RException

Save RData file and close Rengine.

Parameters:

engine - r engine

outputDirectory - save directory

Throws:

org.nuiton.j2r.RException

editRInstruction

protected String editRInstruction(String rCall)

Affiche une boite de dialogue modale permettant de modifier l'expression R.

Parameters:

rCall - r instruction to edit

Returns:

user edited r instruction

checkAllFactorContinuous

protected void checkAllFactorContinuous(List<Factor> factors)
                                 throws SensitivityException

Test que tous les facteurs sont continues. Leve une exception si un facteur discret est présent.

Parameters:

factors - factor list to check

Throws:

SensitivityException

checkAllUniformDistribution

protected void checkAllUniformDistribution(List<Factor> factors)
                                    throws SensitivityException

Test que tous les facteurs sont continues. Leve une exception si un facteur discret est présent.

Parameters:

factors - factor list to check

Throws:

SensitivityException

createImportInstruction

protected String createImportInstruction(SensitivityExport export,
                                         List<SimulationStorage> simulationStorages)

Cree l'instruction R qui permet de relire le contenu d'un fichier genere par un Export Isis.

Parameters:

export - export to get filename to read

simulationStorages - simulation list to read export

Returns:

r instruction

getMinBound

protected double getMinBound(Factor factor)

Get factor domain min bound depending on distribution.

getMaxBound

protected double getMaxBound(Factor factor)

Get factor domain max bound depending on distribution.

getBound

protected double getBound(Factor factor,
                          boolean min)

Get factor domain bound depending on distribution.

Parameters:

min - min or max

getIsisFactorDistribution

protected String getIsisFactorDistribution(List<Factor> factors)